Selected Publications for ATTO 647:
S. Aigal, R. Omidvar, K. Stober, J. Ziegelbauer, T. Eierhoff, J. Schampera, W. Römer, C. Schwan, Septin barriers protect mammalian host cells against Pseudomonas aeruginosa invasion, Cell Reports 41, 111510 (2022).
S. Barui, N. Percivalle, M. Conte, B. Dumontel, L. Racca, M. Carofiglio, V. Cauda, Development of doped ZnO-based biomimicking and tumor-targeted nanotheranostics to improve pancreatic cancer treatment, Cancer Nanotechnology 13, E1338 (2022).
B. Dumontel, F. Susa, T. Limongi, V. Vighetto, D. Debellis, M. Canta, V. Cauda, Nanotechnological engineering of extracellular vesicles for the development of actively targeted hybrid nanodevices, Cell & bioscience 12, 61 (2022).
Y. Feng, X. Zhao, A. White, K. Garcia, P. Fordyce, A bead-based method for high-throughput mapping of the sequence- and force-dependence of T cell activation, Nature Methods 19, 1295 (2022).
J. Hong, M. Gibbons, A. Bashir, D. Wu, S. Shao, Z. Cutts, M. Chavarha, Y. Chen, L. Schiff, M. Foster, V. Church, L. Ching, S. Ahadi, A. Hieu-Thao Le, A. Tran, M. Dimon, M. Coram, B. Williams, P. Jess, M. Berndl, A. Pawlosky, ProtSeq, iScience 25, 103586 (2022).
J. Langeland, T. Lindkvist, C. Kjær, S. Nielsen, Gas-phase Förster resonance energy transfer in mass-selected and trapped ions, Mass Spectrometry Reviews n/a, e21828 (2022).
M.-H. Le, E. Taghuo K, T. Schrader, Molecular tweezers - a new class of potent broad-spectrum antivirals against enveloped viruses, Chemical communications (Cambridge, England) 58, 2954 (2022).
W. Liu, C. Lupfer, A. Samanta, A. Sarkar, A. Walther, Switchable Hydrophobic Pockets in DNA Protocells Enhance Chemical Conversion, Journal of the American Chemical Society (2023).
C. Sanchez, P. Patra, S.-Y. Chang, C. Karathanasis, L. Hanebutte, N. Kilian, M. Cyrklaff, M. Heilemann, U. Schwarz, M. Kudryashev, M. Lanzer, KAHRP dynamically relocalizes to remodeled actin junctions and associates with knob spirals in Plasmodium falciparum-infected erythrocytes, Molecular Microbiology 117, 274 (2022).
C. Trayford, D. Crosbie, T. Rademakers, C. van Blitterswijk, R. Nuijts, S. Ferrari, P. Habibovic, V. LaPointe, M. Dickman, S. van Rijt, Mesoporous Silica-Coated Gold Nanoparticles for Multimodal Imaging and Reactive Oxygen Species Sensing of Stem Cells, ACS Applied Nano Materials 5, 3237 (2022).
M. Vis, B. de Wildt, K. Ito, S. Hofmann, A dialysis medium refreshment cell culture set-up for an osteoblast-osteoclast coculture, Biotechnology and Bioengineering 120, 1120 (2023).
T. Bhatia, R. Clark, P. Needham, K. Miner, A. Jamenis, E. Eckhoff, N. Abraham, X. Hu, P. Wipf, K. Luk, J. Brodsky, R. Leak, Heat Shock Protein 70 as a Sex-Skewed Regulator of α-Synucleinopathy, Neurotherapeutics 18, 2541 (2021).
S. Castelletto, A. Boretti, Viral particle imaging by super-resolution fluorescence microscopy, Chemical Physics Impact 2, 100013 (2021).
D. Eigel, R. Schuster, M. Männel, J. Thiele, M. Panasiuk, L. Andreae, C. Varricchio, A. Brancale, P. Welzel, W. Huttner, C. Werner, B. Newland, K. Long, Sulfonated cryogel scaffolds for focal delivery in ex-vivo brain tissue cultures, Biomaterials 271, 120712 (2021).
D. Eigel, C. Werner, B. Newland, Cryogel biomaterials for neuroscience applications, Neurochemistry International, 105012 (2021).
F. Esmek, T. Erichlandwehr, D. Mors, M. Czech-Sioli, M. Therre, T. Günther, A. Grundhoff, N. Fischer, I. Fernandez-Cuesta, Real time, in-line optical mapping of single molecules of DNA, Biosensors and Bioelectronics: X 9, 100087 (2021).
M. Galkin, A. Priss, O. Topcheva, D. Yushchenko, V. Shvadchak, FRET-based assay for intracellular evaluation of α-synuclein aggregation inhibitors, Journal of Neurochemistry 159, 901 (2021).
L.-X. Gao, W.-Q. Chen, Y. Liu, F.-L. Jiang, Fluorescent Labeling of Human Serum Albumin by Thiol-Cyanimide Addition and Its Application in the Fluorescence Quenching Method for Nanoparticle–Protein Interactions, Analytical Chemistry 94, 3111 (2022).
T. Hamacher, J. Berendsen, J. van Dongen, R. van der Hee, J. Cornelissen, M. Broekhuijse, L. Segerink, Virus removal from semen with a pinched flow fractionation microfluidic chip, Lab on a Chip 21, 4477 (2021).
S. Hambarde, C.-L. Tsai, R. Pandita, A. Bacolla, A. Maitra, V. Charaka, C. Hunt, R. Kumar, O. Limbo, R. Le Meur, W. Chazin, S. Tsutakawa, P. Russell, K. Schlacher, T. Pandita, J. Tainer, EXO5-DNA structure and BLM interactions direct DNA resection critical for ATR-dependent replication restart, Molecular Cell 81, 2989-3006.e9 (2021).
M. Herzog, L. Li, C. Blesken, G. Welsing, T. Tiso, L. Blank, R. Winter, Impact of the number of rhamnose moieties of rhamnolipids on the structure, lateral organization and morphology of model biomembranes, Soft Matter 17, 3191 (2021).
S. Kriegler, T. Paulisch, T. Wegner, F. Glorius, R. Winter, Bipolar Imidazolium-Based Lipid Analogues for Artificial Archaeosomes, Langmuir 37, 11996 (2021).
R. Lira, F. Leomil, R. Melo, K. Riske, R. Dimova, To Close or to Collapse, Advanced science (Weinheim, Baden-Wurttemberg, Germany) 8, 2004068 (2021).
K. Liu, Y. Tao, L. Wang, J. Lei, J. Liu, Q. Liu, A novel multifunctional vaccine platform with dendritic cell-targeting and pH-responsive for cancer immunotherapy, Chemical Engineering Journal 426, 130867 (2021).
T. Reiber, O. Zavoiura, C. Dose, D. Yushchenko, Fluorophore Multimerization as an Efficient Approach towards Bright Protein Labels, European Journal of Organic Chemistry 2021, 2817 (2021).
D. Widerker, F. Paratore, M. Bercovici, G. Kaigala, Biointegrated Fluidic Milling, Advanced Materials Technologies 6, 2000843 (2021).
Aaron M. Joffe, Matthew H. Bakalar, Daniel A. Fletcher, Macrophage phagocytosis assay with reconstituted target particles, Nature Protocols 15, 2230 (2020).
E. Ahmadian, M. Samiei, A. Hasanzadeh, T. Kavetskyy, S. Jafari, M. Alipour, S. Salatin, M. Rameshrad, S. Sharifi, A. Eftekhari, M. Hasanzadeh, Monitoring of drug resistance towards reducing the toxicity of pharmaceutical compounds, Journal of Pharmaceutical and Biomedical Analysis 186, 113265 (2020).
M. Herzog, T. Tiso, L. Blank, R. Winter, Interaction of rhamnolipids with model biomembranes of varying complexity, Biochimica et Biophysica Acta (BBA) - Biomembranes 1862, 183431 (2020).
E. Hoogendijk, E. Swider, A. Staal, P. White, N. van Riessen, G. Glaßer, I. Lieberwirth, A. Musyanovych, C. Serra, M. Srinivas, O. Koshkina, Continuous-Flow Production of Perfluorocarbon-Loaded Polymeric Nanoparticles, ACS Applied Materials & Interfaces 12, 49335 (2020).
Y. Limasale, P. Atallah, C. Werner, U. Freudenberg, R. Zimmermann, Tuning the Local Availability of VEGF within Glycosaminoglycan-Based Hydrogels to Modulate Vascular Endothelial Cell Morphogenesis, Advanced Functional Materials 30, 2000068 (2020).
R. Lira, J. Willersinn, B. Schmidt, R. Dimova, Selective Partitioning of (Biomacro)molecules in the Crowded Environment of Double-Hydrophilic Block Copolymers, Macromolecules 53, 10179 (2020).
A. Milewska, K. Owczarek, A. Szczepanski, K. Pyrc, Visualizing Coronavirus Entry into Cells, Methods in molecular biology (Clifton, N.J.) 2203, 241 (2020).
T. Paulisch, S. Bornemann, M. Herzog, S. Kudruk, L. Roling, A. Linard Matos, H.-J. Galla, V. Gerke, R. Winter, F. Glorius, An Imidazolium-Based Lipid Analogue as a Gene Transfer Agent, Encyclopedia of Marine Biotechnology 26, 17176 (2020).
A.-K. Schneider, T. Scharnweber, D. Cammann, B. Rapp, S. Giselbrecht, C. Niemeyer, Multiscale Microstructure for Investigation of Cell–Cell Communication, Small Methods 4, 2000647 (2020).
Y. Song, X. Zhang, Z. Shen, W. Yang, J. Wei, S. Li, X. Wang, X. Li, Q. He, S. Zhang, Q. Zhang, B. Gao, Improving Brightness and Stability of Si-Rhodamine for Super-Resolution Imaging of Mitochondria in Living Cells, Analytical Chemistry 92, 12137 (2020).
K. Wang, J.-Q. Liu, T. Zhong, X.-L. Liu, Y. Zeng, X. Qiao, T. Xie, Y. Chen, Y.-Y. Gao, B. Tang, J. Li, J. Zhou, D.-W. Pang, J. Chen, C. Chen, Y. Liang, Phase Separation and Cytotoxicity of Tau are Modulated by Protein Disulfide Isomerase and S-nitrosylation of this Molecular Chaperone, Journal of Molecular Biology 432, 2141 (2020).
T. Weil, R. Groß, A. Röcker, K. Bravo-Rodriguez, C. Heid, A. Sowislok, M.-H. Le, N. Erwin, M. Dwivedi, S. Bart, P. Bates, L. Wettstein, J. Müller, M. Harms, K. Sparrer, Y. Ruiz-Blanco, C. Stürzel, J. von Einem, S. Lippold, C. Read, P. Walther, M. Hebel, F. Kreppel, F.-G. Klärner, G. Bitan, M. Ehrmann, T. Weil, R. Winter, T. Schrader, J. Shorter, E. Sanchez-Garcia, J. Münch, Supramolecular Mechanism of Viral Envelope Disruption by Molecular Tweezers, Journal of the American Chemical Society 142, 17024 (2020).
W. Wong, T. Corrales, A. Naga, P. Baumli, A. Kaltbeitzel, M. Kappl, P. Papadopoulos, D. Vollmer, H.‐J. Butt, Microdroplet Contaminants, ACS Nano 14, 3836 (2020).N. Gilat, D. Torchinsky, S. Margalit, Y. Michaeli, S. Avraham, H. Sharim, N. Elkoshi, C. Levy, S. Zirkin, Y. Ebenstein, Rapid Quantification of Oxidation and UV Induced DNA Damage by Repair Assisted Damage Detection-(Rapid RADD), Analytical Chemistry 92, 9887 (2020).
N. Gilat, D. Torchinsky, S. Margalit, Y. Michaeli, S. Avraham, H. Sharim, N. Elkoshi, C. Levy, S. Zirkin, Y. Ebenstein, Rapid Quantification of Oxidation and UV Induced DNA Damage by Repair Assisted Damage Detection-(Rapid RADD), Analytical Chemistry 92, 9887 (2020).
K. Göpfrich, M. Urban, C. Frey, I. Platzman, J. Spatz, N. Liu, Dynamic Actuation of DNA-Assembled Plasmonic Nanostructures in Microfluidic Cell-Sized Compartments, Nano letters 20, 1571 (2020).
M. Battisti, R. Vecchione, C. Casale, F. Pennacchio, V. Lettera, R. Jamaledin, M. Profeta, C. Di Natale, G. Imparato, F. Urciuolo, P. Netti, Non-invasive Production of Multi-Compartmental Biodegradable Polymer Microneedles for Controlled Intradermal Drug Release of Labile Molecules, Frontiers in Bioengineering and Biotechnology 7, 296 (2019).
E. Denham, M. Barton, S. Black, M. Bridge, B. de Wet, R. Paterson, P. van der Merwe, J. Goyette, A generic cell surface ligand system for studying cell–cell recognition, PLoS Biology 17, e3000549 (2019).
B. Dumontel, F. Susa, T. Limongi, M. Canta, L. Racca, A. Chiodoni, N. Garino, G. Chiabotto, M. Centomo, Y. Pignochino, V. Cauda, ZnO nanocrystals shuttled by extracellular vesicles as effective Trojan nano-horses against cancer cells, Nanomedicine 14, 2815 (2019).
L. Hai, A. Zhang, X. Wu, H. Cheng, D. He, T. Wang, X. He, K. Wang, Liposome-Stabilized Black Phosphorus for Photothermal Drug Delivery and Oxygen Self-Enriched Photodynamic Therapy, ACS Applied Nano Materials 3, 563 (2019).
W. Ulaszewski, J. Belter, H. Wiśniewska, J. Szymczak, R. Skowrońska, D. Phillips, M. Kwiatek, Recovery of 2R.2Sk Triticale-Aegilops kotschyi Robertsonian Chromosome Translocations, Agronomy 9, 646 (2019).
M. Valente, Y. Dölen, E. van Dinther, L. Vimeux, M. Fallet, V. Feuillet, C. Figdor, Cross-talk between iNKT cells and CD8 T cells in the spleen requires the IL-4/CCL17 axis for the generation of short-lived effector cells, Proceedings of the National Academy of Sciences 116, 25816 (2019).
S. Smith, L. Selby, A. Johnston, G. Such, The Endosomal Escape of Nanoparticles, Bioconjugate Chemistry 30, 263 (2019).
C. Constantinides, M. Maguire, E. McNeill, R. Carnicer, E. Swider, M. Srinivas, C. Carr, J. Schneider, Fast, quantitative, murine cardiac 19F MRI/MRS of PFCE-labeled progenitor stem cells and macrophages at 9.4T, PLOS ONE 13, e0190558 (2018).
A. Durand, T. Wiesner, M.-A. Gardner, L.-É. Robitaille, A. Bilodeau, C. Gagné, P. de Koninck, F. Lavoie-Cardinal, A machine learning approach for online automated optimization of super-resolution optical microscopy, Nature Communications 9, 5247 (2018).
S. Gunasekera, C. Fernandes-Cerqueira, S. Wennmalm, H. Wähämaa, Y. Sommarin, A. Catrina, P.-J. Jakobsson, U. Göransson, Stabilized Cyclic Peptides as Scavengers of Autoantibodies, ACS Chemical Biology 13, 1525 (2018).
N. Kumar Sarangi, J. Kumar Basu, Pathways for creation and annihilation of nanoscale biomembrane domains reveal alpha and beta-toxin nanopore formation processes, Physical Chemistry Chemical Physics 20, 29116 (2018).
R. Merindol, S. Loescher, A. Samanta, A. Walther, Pathway-controlled formation of mesostructured all-DNA colloids and superstructures, Nature Nanotechnology 13, 730 (2018).
L. Qiu, M. Valente, Y. Dolen, E. Jäger, M. Beest, L. Zheng, C. Figdor, M. Verdoes, Endolysosomal‐Escape Nanovaccines through Adjuvant‐Induced Tumor Antigen Assembly for Enhanced Effector CD8+ T Cell Activation, Small 14 (2018).
S. Wu, J. Jeffet, A. Grunwald, H. Sharim, N. Gilat, D. Torchinsky, Q. Zheng, S. Zirkin, L. Xu, Y. Ebenstein, Microfluidic DNA combing for parallel single-molecule analysis, Nanotechnology 30, 45101 (2018).
G.-W. Kim, G.-H. Nam, I.-S. Kim, S.-Y. Park, Xk-related protein 8 regulates myoblast differentiation and survival, FEBS Journal 284, 3575 (2017).
K. Shi, E. Mori, Z. Nizami, Y. Lin, M. Kato, S. Xiang, L. Wu, M. Ding, Y. Yu, J. Gall, S. McKnight, Toxic PRn poly-dipeptides encoded by the C9orf72 repeat expansion block nuclear import and export, Proceedings of the National Academy of Sciences 114, E1111-E1117 (2017).
J. Ziminski, S. Hessler, G. Margetts-Smith, M. Sieburg, H. Crombag, E. Koya, Changes in Appetitive Associative Strength Modulates Nucleus Accumbens, But Not Orbitofrontal Cortex Neuronal Ensemble Excitability, Journal of Neuroscience 37, 3160 (2017).
I. Antolovic, S. Burri, C. Bruschini, R. Hoebe, E. Charbon, SPAD imagers for super resolution localization microscopy enable analysis of fast fluorophore blinking, Scientific Reports 7, 44108 (2017).
T. Novák, T. Gajdos, J. Sinkó, G. Szabó, M. Erdélyi, TestSTORM, Scientific Reports 7, 951 (2017).
A. Borgia, W. Zheng, K. Buholzer, M. Borgia, A. Schuler, H. Hofmann, A. Soranno, D. Nettels, K. Gast, A. Grishaev, R. Best, B. Schuler, Consistent View of Polypeptide Chain Expansion in Chemical Denaturants from Multiple Experimental Methods, Journal of the American Chemical Society 138, 11714 (2016).
J. Dancourt, H. Zheng, F. Bottanelli, E. Allgeyer, J. Bewersdorf, M. Graham, X. Liu, J. Rothman, G. Lavieu, Small cargoes pass through synthetically glued Golgi stacks, FEBS Letters 590, 1675 (2016).
H. Jang, E. Hwang, Y. Kim, J. Choo, J. Jeong, D. Lim, Surface-Enhanced Raman Scattering and Fluorescence-Based Dual Nanoprobes for Multiplexed Detection of Bacterial Pathogens, Journal of Biomedical Nanotechnology 12, 1938 (2016).
D. Köster, K. Husain, E. Iljazi, A. Bhat, P. Bieling, R. Mullins, M. Rao, S. Mayor, Actomyosin dynamics drive local membrane component organization in an in vitro active composite layer, Proceedings of the National Academy of Sciences 113, E1645-E1654 (2016).
L. Lybaert, N. Vanparijs, K. Fierens, M. Schuijs, L. Nuhn, B. Lambrecht, B. de Geest, A Generic Polymer-Protein Ligation Strategy for Vaccine Delivery, Biomacromolecules 17, 874 (2016).
J. Steffen, M. McCauley, J. Pascal, Fluorescent sensors of PARP-1 structural dynamics and allosteric regulation in response to DNA damage, Nucleic Acids Research 44, 9771 (2016).
X. Wu, N. Schneider, A. Platen, I. Mitra, M. Blazek, R. Zengerle, R. Schüle, M. Meier, In situ characterization of the mTORC1 during adipogenesis of human adult stem cells on chip, Proceedings of the National Academy of Sciences 113, E4143-E4150 (2016).
D. Wüstner, M. Modzel, F. Lund, M. Lomholt, Imaging approaches for analysis of cholesterol distribution and dynamics in the plasma membrane, Chemistry and Physics of Lipids 199, 106 (2016).
C. Büll, T.J. Boltje, Targeted Delivery of a Sialic Acid-Blocking Glycomimetic to Cancer Cells Inhibits Metastatic Spread, ACS Nano 9, 733 (2015).
C. Riedel, R. Gabizon, The heat released during catalytic turnover enhances the diffusion of an enzyme, Nature 517, 227 (2015).
L.J. Cruz, P.J. Tacken et al., Tracking Targeted Bimodal Nanovaccines: Immune Responses and Routing in Cells, Tissue, and Whole Organism, Mol. Pharmaceutics 11, 4299 (2014).
S. Fehse, S. Nowag et al., Copper Transport Mediated by Nanocarrier Systems in a Blood−Brain Barrier In Vitro Model, Biomacromolecules 15, 1910 (2014).
Y. Qiu, E. Antony et al., Srs2 prevents Rad51 filament formation by repetitive motion on DNA, Nature Communications 4, article 2281 (2013).
Y. Zhao, D.Y. Alakhova, A simple way to enhance Doxil® therapy: Drug release from liposomes at the tumor site by amphiphilic block copolymer, J. Contr. Release 168, 61 (2013).
S. Erokhina, O. Konovalov et al., Release kinetics of gold nanoparticles from collagen microcapsules by total reflection X-ray fluorescence, Colloids Surfaces A 417, 83 (2012).
D. Hill, B. McDonnell et al., Novel disposable biochip platform employing supercritical angle fluorescence for enhanced fluorescence collection, Biomed. Microdevices 13, 759 (2011).
L. Pastorino, S. Erokhina et al., Collagen containing microcapsules: Smart containers for disease controlled therapy, J. Colloid Interface Sci. 357, 56 (2011).
S. Roizard, C. Danelon et al., Activation of G-Protein-Coupled Receptors in Cell-Derived Plasma Membranes Supported on Porous Beads, J. Am. Chem. Soc. 133, 16868 (2011).
D. Püntner, M. F. Engelke et al., Stepwise loss of fluorescent core protein V from human adenovirus during entry into cells, J. Virology 85, 481 (2011).
D. Hildebrand, K. Heeg et al., Pasteurella multocida Toxin-Stimulated Osteoclast Differentiation Is B Cell Dependent, Infection and Immunity 79, 220 (2011).
D. W. Lim, S. Hwang et al., Compartmentalization of Gold Nanocrystals in Polymer Microparticles using Electrohydrodynamic Co-Jetting, Macromol. Rapid Commun. 31, 176 (2010).
C. Ringemann, B. Harke, C. van Middendorf et al., Exploring single-molecule dynamics with fluorescence nanoscopy, New J. Phys. 11 (2009).
Y. Jiang, A. Matevossian, H.-S. Huang, J. Straubhaar, Sch. Akbarian, Isolation of neuronal chromatin from brain tissue, Neuroscience 9, 42 (2009).
H. Lu, O. Schöps, U. Woggon, C.M. Niemeyer, Self-Assembled Donor Comprising Quantum Dots and Fluorescent Proteins for Long-Range Fluorescence Resonance Energy Transfer, J. Am. Chem. Soc. 130, 4815 (2008).
J.-M. Segura, Ph. Guillaume, S. Mark, D. Dojcinovic et al., Increased Mobility of Major Histocompatibility Complex I-Peptide Complexes Decreases the Sensitivity of Antigen-Reaction, J. Biol. Chem. 283, 24254 (2008).
A. Bruckbauer, P. James, D. Zhou et al., Nanopipet delivery of individual molecules to cellular compartments for single molecule fluorescence tracking, Biophys. J. 93, 3120 (2007).
E.G. Guignet, J.-M. Segura, R. Hovius, H. Vogel, Repetitive Reversible Labeling of Proteins at Polyhhistidine Sequences for Single-Molecule Imaging in Live Cells, ChemPhysChem 8, 1221 (2007).
F. Kukolka, O. Schoeps, U. Woggon, C.M. Niemeyer, DNA-Directed Assembly of Supramolecular Fluorescent Protein Energy Transfer System, Bioconjugate Chem. 18, 621 (2007).
B. Müller, E. Zaychikov, C. Bräuchle, D. Lamb, Pulsed Interleaved Excitation, Biophys. J. 89, 3508 (2005).
D. Lamb, B. Müller, C. Bräuchle, Enhancing the Sensitivity of Fluorescence Cerrelation Spectroscopy by Using Time-Correlated Single-Photon Counting, Curr. Pharmaceut. Biol. 6, 405 (2005).
